sysroot: Don't individually fsync dirs in checkout, rely on syncfs

sysroot: Don't individually fsync dirs in checkout, rely on syncfs

Originally, a lot of the `fsync()` calls here were added for the
wrong reason - I was chasing a bug that ended up being the extlinux
bootloader not parsing 64 bit ext4 filesystems.  But since it looked
like corruption, I tried adding a lot more `fsync()` calls.

All we should have to do is use `syncfs()`.  If that doesn't work,
it's a kernel bug.

I'm making this change because skipping the individual fsyncs can be a
major performance win - it's easier for the FS to optimize, we do more
in parallel, etc.

https://bugzilla.gnome.org/show_bug.cgi?id=757117